Mercurial > repos > siwaa > carboseq_s

annotate carboseqSplit.xml @ 18:ce2b35fc669b draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/8e9c862054881aae267afdc3f7945ed0916505bc/toos/CarboSeqSimulator commit 8e9c862054881aae267afdc3f7945ed0916505bc-dirty"
author siwaa
date Fri, 10 Jan 2025 14:34:35 +0000
parents de71663fbce4
children
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15
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
1 <tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.4">
5
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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2 <description>To split input data of CarboSeq</description>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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3 <requirements>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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5 </requirements>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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diff changeset
6 <command detect_errors="exit_code"><![CDATA[
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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7 python $__tool_directory__/csopraSplitInput.py ${inputFile} ${chunkSize}
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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8 ]]>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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9 </command>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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10 <inputs>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
11 <param name="inputFile" type="data" format="zip" label="CarboSeq input (zip)"/>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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diff changeset
12 <param name="chunkSize" type="integer" value="1" min= "1" max= "20000" format="csv" label="chunck size" help="chunck size" />
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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13 </inputs>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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14 <outputs>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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15 <collection name="splited" type="list" label="A list of CarboSeq input (zip)">
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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16 <discover_datasets pattern="__name_and_ext__" directory="outputs"/>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
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17 </collection>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
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18 </outputs>
15
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
19 <tests>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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20 <test>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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21 <param name="inputFile" value="input/40Sites/40Sites.zip" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
22 <param name="chunkSize" value="10" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
23 <output_collection name="splited" type="list" count="4">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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24 <element name="input_1">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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25 <assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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26 <has_archive_member path="crop.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
27 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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28 <has_n_lines n="201" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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29 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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30 <has_archive_member path="soil.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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31 <has_text text="ID,LAT" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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32 <has_n_lines n="11" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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33 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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34 <has_archive_member path="units.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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35 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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36 <has_n_lines n="81" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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37 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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38 </assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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39 </element>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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40 <element name="input_2">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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41 <assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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42 <has_archive_member path="crop.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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43 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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44 <has_n_lines n="201" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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45 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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46 <has_archive_member path="soil.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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47 <has_text text="ID,LAT" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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48 <has_n_lines n="11" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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49 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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50 <has_archive_member path="units.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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51 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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52 <has_n_lines n="81" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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53 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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54 </assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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55 </element>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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56 <element name="input_3">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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57 <assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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58 <has_archive_member path="crop.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
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59 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
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diff changeset
60 <has_n_lines n="201" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
61 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
62 <has_archive_member path="soil.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
63 <has_text text="ID,LAT" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
64 <has_n_lines n="11" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
65 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
66 <has_archive_member path="units.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
67 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
68 <has_n_lines n="81" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
69 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
70 </assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
71 </element>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
72 <element name="input_4">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
73 <assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
74 <has_archive_member path="crop.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
75 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
76 <has_n_lines n="201" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
77 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
78 <has_archive_member path="soil.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
79 <has_text text="ID,LAT" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
80 <has_n_lines n="11" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
81 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
82 <has_archive_member path="units.csv">
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
83 <has_text text="ID,NUM,CROP" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
84 <has_n_lines n="81" />
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
85 </has_archive_member>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
86 </assert_contents>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
87 </element>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
88 </output_collection>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
89 </test>
de71663fbce4 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
siwaa
parents: 14
diff changeset
90 </tests>
5
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
91 <help>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
92 the CarboSeq CarboseqSimulator tool
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
93 ===================================
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
94
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
95 credits
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
96 -------
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
97 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
98 - Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
99 - Copyright: INRAE
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
100 </help>
3e7978af2ba2 "planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
siwaa
parents:
diff changeset
101 </tool>