Mercurial > repos > siwaa > carboseq_s

diff carboseqSplit.xml @ 15:de71663fbce4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
author siwaa
date Tue, 10 Dec 2024 09:14:52 +0000
parents e455667fe22f
children
line wrap: on
line diff
--- a/carboseqSplit.xml	Fri Sep 20 09:00:02 2024 +0000
+++ b/carboseqSplit.xml	Tue Dec 10 09:14:52 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.3">
+<tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.4">
   <description>To split input data of CarboSeq</description>
   <requirements>
     <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container>
@@ -16,8 +16,78 @@
       <discover_datasets pattern="__name_and_ext__" directory="outputs"/>
     </collection>
   </outputs>
-<tests>
-</tests>
+  <tests>
+    <test>
+      <param name="inputFile" value="input/40Sites/40Sites.zip" />
+      <param name="chunkSize" value="10" />          
+      <output_collection name="splited" type="list" count="4">
+        <element name="input_1">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+        <element name="input_2">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+        <element name="input_3">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+        <element name="input_4">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+      </output_collection>
+    </test>
+    </tests>
 <help>
 the CarboSeq CarboseqSimulator tool
 ===================================