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comparison carboseqSplit.xml @ 15:de71663fbce4 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"
author siwaa
date Tue, 10 Dec 2024 09:14:52 +0000
parents e455667fe22f
children
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14:e455667fe22f 15:de71663fbce4
1 <tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.3"> 1 <tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.4">
2 <description>To split input data of CarboSeq</description> 2 <description>To split input data of CarboSeq</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
14 <outputs> 14 <outputs>
15 <collection name="splited" type="list" label="A list of CarboSeq input (zip)"> 15 <collection name="splited" type="list" label="A list of CarboSeq input (zip)">
16 <discover_datasets pattern="__name_and_ext__" directory="outputs"/> 16 <discover_datasets pattern="__name_and_ext__" directory="outputs"/>
17 </collection> 17 </collection>
18 </outputs> 18 </outputs>
19 <tests> 19 <tests>
20 </tests> 20 <test>
21 <param name="inputFile" value="input/40Sites/40Sites.zip" />
22 <param name="chunkSize" value="10" />
23 <output_collection name="splited" type="list" count="4">
24 <element name="input_1">
25 <assert_contents>
26 <has_archive_member path="crop.csv">
27 <has_text text="ID,NUM,CROP" />
28 <has_n_lines n="201" />
29 </has_archive_member>
30 <has_archive_member path="soil.csv">
31 <has_text text="ID,LAT" />
32 <has_n_lines n="11" />
33 </has_archive_member>
34 <has_archive_member path="units.csv">
35 <has_text text="ID,NUM,CROP" />
36 <has_n_lines n="81" />
37 </has_archive_member>
38 </assert_contents>
39 </element>
40 <element name="input_2">
41 <assert_contents>
42 <has_archive_member path="crop.csv">
43 <has_text text="ID,NUM,CROP" />
44 <has_n_lines n="201" />
45 </has_archive_member>
46 <has_archive_member path="soil.csv">
47 <has_text text="ID,LAT" />
48 <has_n_lines n="11" />
49 </has_archive_member>
50 <has_archive_member path="units.csv">
51 <has_text text="ID,NUM,CROP" />
52 <has_n_lines n="81" />
53 </has_archive_member>
54 </assert_contents>
55 </element>
56 <element name="input_3">
57 <assert_contents>
58 <has_archive_member path="crop.csv">
59 <has_text text="ID,NUM,CROP" />
60 <has_n_lines n="201" />
61 </has_archive_member>
62 <has_archive_member path="soil.csv">
63 <has_text text="ID,LAT" />
64 <has_n_lines n="11" />
65 </has_archive_member>
66 <has_archive_member path="units.csv">
67 <has_text text="ID,NUM,CROP" />
68 <has_n_lines n="81" />
69 </has_archive_member>
70 </assert_contents>
71 </element>
72 <element name="input_4">
73 <assert_contents>
74 <has_archive_member path="crop.csv">
75 <has_text text="ID,NUM,CROP" />
76 <has_n_lines n="201" />
77 </has_archive_member>
78 <has_archive_member path="soil.csv">
79 <has_text text="ID,LAT" />
80 <has_n_lines n="11" />
81 </has_archive_member>
82 <has_archive_member path="units.csv">
83 <has_text text="ID,NUM,CROP" />
84 <has_n_lines n="81" />
85 </has_archive_member>
86 </assert_contents>
87 </element>
88 </output_collection>
89 </test>
90 </tests>
21 <help> 91 <help>
22 the CarboSeq CarboseqSimulator tool 92 the CarboSeq CarboseqSimulator tool
23 =================================== 93 ===================================
24 94
25 credits 95 credits