diff carboseqSplit.xml @ 5:3e7978af2ba2 draft

"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/5f761ea7dab0a6f8c978cbbe4946e16edc6d032e/toos/CarboSeqSimulator commit 5f761ea7dab0a6f8c978cbbe4946e16edc6d032e-dirty"
author siwaa
date Wed, 28 Aug 2024 14:53:30 +0000
parents
children 20886bc40659
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/carboseqSplit.xml	Wed Aug 28 14:53:30 2024 +0000
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+<tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.1">
+  <description>To split input data of CarboSeq</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+  python $__tool_directory__/csopraSplitInput.py ${inputFile} ${chunkSize}
+    ]]>
+  </command>
+  <inputs>
+    <param name="inputFile" type="data" format="zip" label="CarboSeq input (zip)"/>
+    <param name="chunkSize" type="integer" value="1" min= "1" max= "20000" format="csv" label="chunck size" help="chunck size" />    
+  </inputs>
+  <outputs>
+    <collection name="splited" type="list" label="A list of CarboSeq input (zip)">
+      <discover_datasets pattern="__name_and_ext__" directory="outputs"/>
+    </collection>
+  </outputs>
+<tests>
+</tests>
+<help>
+the CarboSeq CarboseqSimulator tool
+===================================
+
+credits
+-------
+-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
+-  Copyright: INRAE
+</help>
+</tool>