Mercurial > repos > siwaa > dairyfit_mergeclim

annotate mergeclim.xml @ 0:58f2fb2b8794 draft

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"planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
author siwaa
date Mon, 23 Feb 2026 14:12:21 +0000
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children 6622d8503a60
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58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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1 <tool id="mergeClim" name="mergeClim" version="1.0.0">
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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2 <description>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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3 to merge Stics climate files archives tgz to a single zip, and choose meshes to keep
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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4 </description>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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5 <command detect_errors="exit_code">
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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6 mkdir toArchive;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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7 #for $i, $input in enumerate($inputData)
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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8 echo '${input}'; echo '${input.name}';
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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9 cp '${input}' 'tmp_${i}.tgz';
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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10 mkdir toArchive/climDir${i};
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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11 tar -xvf 'tmp_${i}.tgz' -C 'toArchive/climDir${i}';
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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12 #end for
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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13 tree;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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14 mkdir Clim;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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15 cat ${listOfMesh} | xargs -t -i find . -type f -name {}* | xargs -t -i cp {} Clim;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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16 zip -r Clim Clim;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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17 mv Clim.zip ${output};
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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18 </command>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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19 <inputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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20 <param name="inputData" type="data" format="tgz" multiple="true" label="a tgz archive of Stics Climate files"/>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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21 <param name="listOfMesh" type="data" format="txt" label="list of mesh"/>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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22 </inputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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23 <outputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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24 <data format="zip" name="output" label="SticsClimateFiles"/>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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25 </outputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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26 <tests>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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27 </tests>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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28 <help>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
siwaa
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29 the mergeClim Tool
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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30 ==================
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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31
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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32 credits
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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33 -------
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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34 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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35 - Tool Site: https://forgemia.inra.fr/dairyfit/lot2/dairyfit-toolbox
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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36 - Copyright: INRAE
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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37 </help>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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38 </tool>