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"planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 7c0dc2d6e82b42d4275208371c24e8661f7d1d7b"
author siwaa
date Mon, 23 Feb 2026 16:16:07 +0000
parents 58f2fb2b8794
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6622d8503a60 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 7c0dc2d6e82b42d4275208371c24e8661f7d1d7b"
siwaa
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1 <tool id="mergeClim" name="mergeClim" version="1.0.1">
0
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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2 <description>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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3 to merge Stics climate files archives tgz to a single zip, and choose meshes to keep
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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4 </description>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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5 <command detect_errors="exit_code">
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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6 mkdir toArchive;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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7 #for $i, $input in enumerate($inputData)
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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8 echo '${input}'; echo '${input.name}';
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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9 cp '${input}' 'tmp_${i}.tgz';
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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10 mkdir toArchive/climDir${i};
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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11 tar -xvf 'tmp_${i}.tgz' -C 'toArchive/climDir${i}';
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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12 #end for
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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13 tree;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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14 mkdir Clim;
1
6622d8503a60 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 7c0dc2d6e82b42d4275208371c24e8661f7d1d7b"
siwaa
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15 cat ${listOfMesh} | xargs -t -i find toArchive -type f -name {}* >> tmp;
6622d8503a60 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 7c0dc2d6e82b42d4275208371c24e8661f7d1d7b"
siwaa
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16 cat tmp | xargs -t -i cp {} Clim;
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17 zip -r Clim Clim;
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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18 mv Clim.zip ${output};
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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19 </command>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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20 <inputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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21 <param name="inputData" type="data" format="tgz" multiple="true" label="a tgz archive of Stics Climate files"/>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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22 <param name="listOfMesh" type="data" format="txt" label="list of mesh"/>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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23 </inputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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24 <outputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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25 <data format="zip" name="output" label="SticsClimateFiles"/>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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26 </outputs>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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27 <tests>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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28 </tests>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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29 <help>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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30 the mergeClim Tool
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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31 ==================
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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32
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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33 credits
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34 -------
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35 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
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36 - Tool Site: https://forgemia.inra.fr/dairyfit/lot2/dairyfit-toolbox
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37 - Copyright: INRAE
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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38 </help>
58f2fb2b8794 "planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
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39 </tool>