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comparison mergeclim.xml @ 0:58f2fb2b8794 draft

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"planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 95eac72b74db1401ea6c60705beb66f35ba03b22"
author siwaa
date Mon, 23 Feb 2026 14:12:21 +0000
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1 <tool id="mergeClim" name="mergeClim" version="1.0.0">
2 <description>
3 to merge Stics climate files archives tgz to a single zip, and choose meshes to keep
4 </description>
5 <command detect_errors="exit_code">
6 mkdir toArchive;
7 #for $i, $input in enumerate($inputData)
8 echo '${input}'; echo '${input.name}';
9 cp '${input}' 'tmp_${i}.tgz';
10 mkdir toArchive/climDir${i};
11 tar -xvf 'tmp_${i}.tgz' -C 'toArchive/climDir${i}';
12 #end for
13 tree;
14 mkdir Clim;
15 cat ${listOfMesh} | xargs -t -i find . -type f -name {}* | xargs -t -i cp {} Clim;
16 zip -r Clim Clim;
17 mv Clim.zip ${output};
18 </command>
19 <inputs>
20 <param name="inputData" type="data" format="tgz" multiple="true" label="a tgz archive of Stics Climate files"/>
21 <param name="listOfMesh" type="data" format="txt" label="list of mesh"/>
22 </inputs>
23 <outputs>
24 <data format="zip" name="output" label="SticsClimateFiles"/>
25 </outputs>
26 <tests>
27 </tests>
28 <help>
29 the mergeClim Tool
30 ==================
31
32 credits
33 -------
34 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
35 - Tool Site: https://forgemia.inra.fr/dairyfit/lot2/dairyfit-toolbox
36 - Copyright: INRAE
37 </help>
38 </tool>