Mercurial > repos > siwaa > gama
changeset 15:5667e00be2aa draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
| author | siwaa |
|---|---|
| date | Mon, 10 Jun 2024 10:38:08 +0000 |
| parents | e7772bdae78d |
| children | 4117e2f0a591 |
| files | ESSAISENCOURS.txt gama_tool.xml src/MY_gama-headless.sh |
| diffstat | 3 files changed, 7 insertions(+), 5 deletions(-) [+] |
line wrap: on
line diff
--- a/ESSAISENCOURS.txt Mon Jun 10 10:15:22 2024 +0000 +++ b/ESSAISENCOURS.txt Mon Jun 10 10:38:08 2024 +0000 @@ -22,7 +22,7 @@ gama.def: + chmod -R 777 /opt -<tool id="gama_tool" name="gama" version="1.0.0m"> +<tool id="gama_tool" name="gama" version="1.0.0n"> registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3 @@ -44,7 +44,9 @@ mkdir -p ./_java/.userPrefs #chmod -R 755 ./_java chmod -R 777 ./_java -export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs" +#export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs" +if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then + SOURCES
--- a/gama_tool.xml Mon Jun 10 10:15:22 2024 +0000 +++ b/gama_tool.xml Mon Jun 10 10:38:08 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="gama_tool" name="gama" version="1.0.0m"> +<tool id="gama_tool" name="gama" version="1.0.0n"> <description>tool for GAMA Platform</description>
--- a/src/MY_gama-headless.sh Mon Jun 10 10:15:22 2024 +0000 +++ b/src/MY_gama-headless.sh Mon Jun 10 10:38:08 2024 +0000 @@ -68,14 +68,14 @@ mkdir -p ./_java/.userPrefs #chmod -R 755 ./_java chmod -R 777 ./_java -export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs" +#export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs" #if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then MY_TEMP_DIR=. -if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then +if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then echo "Error in you command, here's the log :" cat $passWork/.metadata/.log exit 1