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"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
author siwaa
date Tue, 24 Feb 2026 08:53:06 +0000
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1 <tool id="redelacSticsComputeAclim" name="redelacSticsComputeAclim" version="1.0.1">
2 <description>to compute aclim on Stics climate</description>
3 <requirements>
4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002
5 </container>
6 </requirements>
7 <command detect_errors="aggressive">
8 <![CDATA[
9 mkdir Climat &&
10 unzip -d ./Climat ${Climat} &&
11 Rscript --verbose $__tool_directory__/redelacComputeAclim.R ./Climat "
12 #for $i, $h in enumerate($horizons)
13 ${h.name} ${h.min} ${h.max},
14 #end for
15 " ./output.rds ./output.csv ./output1.png ./output2.png &&
16 cp ./output.csv ${aclim} &&
17 cp ./output.rds ${output} &&
18 cp ./output1.png ${output1} &&
19 cp ./output2.png ${output1}
20 ]]>
21 </command>
22 <inputs>
23 <repeat name ="horizons" min="1" title="Specify a horizon">
24 <param name="name" type="text" value="ref" label="The horizon name"/>
25 <param name="min" type="integer" value="1990" label="The horizon lower range year"/>
26 <param name="max" type="integer" value="2025" label="The horizon upper range year"/>
27 </repeat>
28
29 <param name="Climat" type="data" format="zip" label="Select a climat scenario (zip file)"/>
30 </inputs>
31 <outputs>
32 <data format="csv" name="aclim"
33 label="aclimValuesPerHorizon">
34 </data>
35 <data format="rds" name="output"
36 label="output">
37 </data>
38 <data format="png" name="output1"
39 label="output1">
40 </data>
41 <data format="png" name="output2"
42 label="output2">
43 </data>
44 </outputs>
45 <tests>
46 </tests>
47 <help>
48 *The usage of this tool is restricted to the user of the redelac_authorized group.*
49
50 *To be granted, apply to the REDELAC Project Team and then request to SIWAA*
51
52 Documentation
53 -------------
54 A tool to compute AClim for REDELAC
55
56 Credits
57 -------
58 - Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
59 - Stics Site: https://www6.paca.inra.fr/stics_eng
60 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
61 - Copyright: INRAE
62 </help>
63 </tool>