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annotate redelacComputeAclim.xml @ 0:80842c5ecb58 draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
author siwaa
date Tue, 24 Feb 2026 08:53:06 +0000
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80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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1 <tool id="redelacSticsComputeAclim" name="redelacSticsComputeAclim" version="1.0.1">
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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2 <description>to compute aclim on Stics climate</description>
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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3 <requirements>
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4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002
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5 </container>
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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6 </requirements>
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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7 <command detect_errors="aggressive">
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8 <![CDATA[
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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9 mkdir Climat &&
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10 unzip -d ./Climat ${Climat} &&
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11 Rscript --verbose $__tool_directory__/redelacComputeAclim.R ./Climat "
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12 #for $i, $h in enumerate($horizons)
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13 ${h.name} ${h.min} ${h.max},
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14 #end for
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15 " ./output.rds ./output.csv ./output1.png ./output2.png &&
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16 cp ./output.csv ${aclim} &&
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17 cp ./output.rds ${output} &&
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18 cp ./output1.png ${output1} &&
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19 cp ./output2.png ${output1}
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20 ]]>
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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21 </command>
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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22 <inputs>
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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23 <repeat name ="horizons" min="1" title="Specify a horizon">
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24 <param name="name" type="text" value="ref" label="The horizon name"/>
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25 <param name="min" type="integer" value="1990" label="The horizon lower range year"/>
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26 <param name="max" type="integer" value="2025" label="The horizon upper range year"/>
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27 </repeat>
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28
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29 <param name="Climat" type="data" format="zip" label="Select a climat scenario (zip file)"/>
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30 </inputs>
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31 <outputs>
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32 <data format="csv" name="aclim"
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33 label="aclimValuesPerHorizon">
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34 </data>
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35 <data format="rds" name="output"
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36 label="output">
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37 </data>
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38 <data format="png" name="output1"
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39 label="output1">
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40 </data>
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41 <data format="png" name="output2"
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42 label="output2">
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43 </data>
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44 </outputs>
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45 <tests>
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46 </tests>
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47 <help>
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48 *The usage of this tool is restricted to the user of the redelac_authorized group.*
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49
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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50 *To be granted, apply to the REDELAC Project Team and then request to SIWAA*
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51
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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52 Documentation
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53 -------------
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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54 A tool to compute AClim for REDELAC
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55
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56 Credits
80842c5ecb58 "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
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57 -------
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58 - Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
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59 - Stics Site: https://www6.paca.inra.fr/stics_eng
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60 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
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61 - Copyright: INRAE
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62 </help>
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63 </tool>