Mercurial > repos > siwaa > redelac_stics_a
diff redelacComputeAclim.xml @ 0:80842c5ecb58 draft default tip
"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/68f4e9db390070700af804f77468145abfc26bc0/tools/REDELACcomputeAclim commit 68f4e9db390070700af804f77468145abfc26bc0-dirty"
| author | siwaa |
|---|---|
| date | Tue, 24 Feb 2026 08:53:06 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/redelacComputeAclim.xml Tue Feb 24 08:53:06 2026 +0000 @@ -0,0 +1,63 @@ +<tool id="redelacSticsComputeAclim" name="redelacSticsComputeAclim" version="1.0.1"> + <description>to compute aclim on Stics climate</description> + <requirements> + <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002 + </container> + </requirements> + <command detect_errors="aggressive"> + <![CDATA[ + mkdir Climat && + unzip -d ./Climat ${Climat} && + Rscript --verbose $__tool_directory__/redelacComputeAclim.R ./Climat " + #for $i, $h in enumerate($horizons) + ${h.name} ${h.min} ${h.max}, + #end for + " ./output.rds ./output.csv ./output1.png ./output2.png && + cp ./output.csv ${aclim} && + cp ./output.rds ${output} && + cp ./output1.png ${output1} && + cp ./output2.png ${output1} + ]]> + </command> + <inputs> + <repeat name ="horizons" min="1" title="Specify a horizon"> + <param name="name" type="text" value="ref" label="The horizon name"/> + <param name="min" type="integer" value="1990" label="The horizon lower range year"/> + <param name="max" type="integer" value="2025" label="The horizon upper range year"/> + </repeat> + + <param name="Climat" type="data" format="zip" label="Select a climat scenario (zip file)"/> + </inputs> + <outputs> + <data format="csv" name="aclim" + label="aclimValuesPerHorizon"> + </data> + <data format="rds" name="output" + label="output"> + </data> + <data format="png" name="output1" + label="output1"> + </data> + <data format="png" name="output2" + label="output2"> + </data> + </outputs> + <tests> + </tests> + <help> +*The usage of this tool is restricted to the user of the redelac_authorized group.* + +*To be granted, apply to the REDELAC Project Team and then request to SIWAA* + +Documentation +------------- +A tool to compute AClim for REDELAC + +Credits +------- +- Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team +- Stics Site: https://www6.paca.inra.fr/stics_eng +- Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr +- Copyright: INRAE + </help> +</tool>
