view redelacPlanExpander.xml @ 0:bc7ae8dd3d3c draft

"planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
author siwaa
date Mon, 19 Jun 2023 15:51:01 +0000
parents
children 789a70a4c317
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<tool id="redelacPlanExpander" name="redelacPlanExpander" version="1.0.0">
  <description>to expand REDELAC situations according to a plan</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox:latest</container>
  </requirements>
  <command detect_errors="aggressive">
    <![CDATA[
	     python $__tool_directory__/redelacPlanExpander.py ${typeOfRotation} ${USMs} ${Liste_plantes} ${REDELACplan} ${mailles} ${USMsExp} ${SuccessionsExp} ${Stations} ${aclimParHorizon} ${latitudeMailleDrias} ${StationsExp}
     ]]>
  </command>
  <inputs>
    <param name="typeOfRotation" type="select" label="Select the type of rotation">
        <option value="PP">Prairie Permanente</option>
        <option value="GC">Grande Culture</option>
    </param>
    <param name="REDELACplan" type="data" format="csv" label="Select a redelac spatial plan (csv)"/>
    <param name="USMs" type="data" format="csv" label="Select a USMs list template (csv)"/>
    <param name="Liste_plantes" type="data" format="csv" label="Select a Liste_plantes (csv)"/>
    <param name="Stations" type="data" format="csv" label="Select a Stations (csv)"/>
    <param name="mailles" type="data" format="csv" label="Select mailles files with link between DRIAS and Safran (csv)"/>
    <param name="aclimParHorizon" type="data" format="csv" label="Select a aclimParHorizon (csv)"/>
    <param name="latitudeMailleDrias" type="data" format="csv" label="Select a latitudeMailleDrias(csv)"/>
  </inputs>
  <outputs>
    <data format="csv" name="USMsExp" label="Expanded list of USMs (csv)"/>
    <data format="csv" name="StationsExp" label="Expanded list of meteo Stations (csv)"/>
    <data format="csv" name="SuccessionsExp" label="Expanded list of successions (csv)"/>
  </outputs>
  <tests>
  </tests>
  <help>
Documentation
-------------
A tool to expand Stics situations according to a REDELAC spatial plan.

Credits
-------
-  Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Copyright: INRAE
  </help>
</tool>