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annotate redelacPlanExpander.xml @ 0:bc7ae8dd3d3c draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
author siwaa
date Mon, 19 Jun 2023 15:51:01 +0000
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children 789a70a4c317
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bc7ae8dd3d3c "planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
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1 <tool id="redelacPlanExpander" name="redelacPlanExpander" version="1.0.0">
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2 <description>to expand REDELAC situations according to a plan</description>
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3 <requirements>
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4 <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox:latest</container>
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5 </requirements>
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6 <command detect_errors="aggressive">
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7 <![CDATA[
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8 python $__tool_directory__/redelacPlanExpander.py ${typeOfRotation} ${USMs} ${Liste_plantes} ${REDELACplan} ${mailles} ${USMsExp} ${SuccessionsExp} ${Stations} ${aclimParHorizon} ${latitudeMailleDrias} ${StationsExp}
bc7ae8dd3d3c "planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
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9 ]]>
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10 </command>
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11 <inputs>
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12 <param name="typeOfRotation" type="select" label="Select the type of rotation">
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13 <option value="PP">Prairie Permanente</option>
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14 <option value="GC">Grande Culture</option>
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15 </param>
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16 <param name="REDELACplan" type="data" format="csv" label="Select a redelac spatial plan (csv)"/>
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17 <param name="USMs" type="data" format="csv" label="Select a USMs list template (csv)"/>
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18 <param name="Liste_plantes" type="data" format="csv" label="Select a Liste_plantes (csv)"/>
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19 <param name="Stations" type="data" format="csv" label="Select a Stations (csv)"/>
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20 <param name="mailles" type="data" format="csv" label="Select mailles files with link between DRIAS and Safran (csv)"/>
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21 <param name="aclimParHorizon" type="data" format="csv" label="Select a aclimParHorizon (csv)"/>
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22 <param name="latitudeMailleDrias" type="data" format="csv" label="Select a latitudeMailleDrias(csv)"/>
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23 </inputs>
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24 <outputs>
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25 <data format="csv" name="USMsExp" label="Expanded list of USMs (csv)"/>
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26 <data format="csv" name="StationsExp" label="Expanded list of meteo Stations (csv)"/>
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27 <data format="csv" name="SuccessionsExp" label="Expanded list of successions (csv)"/>
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28 </outputs>
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29 <tests>
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30 </tests>
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31 <help>
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32 Documentation
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33 -------------
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34 A tool to expand Stics situations according to a REDELAC spatial plan.
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35
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36 Credits
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37 -------
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38 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
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39 - Copyright: INRAE
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40 </help>
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41 </tool>