Mercurial > repos > siwaa > redelac_stics_t

comparison redelacSticsTool.xml @ 15:af807768332e draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 179e64aac208ae8af4d7416a7d5ff4b9da572850"
author siwaa
date Fri, 06 Feb 2026 13:28:00 +0000
parents 30d7b0210581
children
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14:30d7b0210581 15:af807768332e
1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.16"> 1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.17">
2 <description>to run Stics for REDELAC</description> 2 <description>to run Stics for REDELAC</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:4bf27fdaedcc1ffe10a6017da2255f1d6e751796 4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002
5 </container> 5 </container>
6 </requirements> 6 </requirements>
7 <command detect_errors="aggressive"> 7 <command detect_errors="aggressive">
8 <![CDATA[ 8 <![CDATA[
9 #if $additional: 9 #if $additional:
14 #if $REDELAC.optim == 'optim': 14 #if $REDELAC.optim == 'optim':
15 parallel=${$REDELAC.parallel} && 15 parallel=${$REDELAC.parallel} &&
16 #else 16 #else
17 parallel=sequential && 17 parallel=sequential &&
18 #end if 18 #end if
19 bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan} 19 bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan} ${outpuType}
20 ]]> 20 ]]>
21 </command> 21 </command>
22 <inputs> 22 <inputs>
23 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/> 23 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/>
24 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/> 24 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/>
37 <when value="noptim"> 37 <when value="noptim">
38 </when> 38 </when>
39 </conditional> 39 </conditional>
40 <param name="outputsOnly" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="To get results only"/> 40 <param name="outputsOnly" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="To get results only"/>
41 <param name="compress" type="boolean" checked="true" truevalue="-6" falsevalue="-0" label="To compress or not the output(compressing does slow down the job)"/> 41 <param name="compress" type="boolean" checked="true" truevalue="-6" falsevalue="-0" label="To compress or not the output(compressing does slow down the job)"/>
42 <param name="outpuType" type="select" label="To choose the outpuType of results (rds+csv, parquet, both)">
43 <option value="parquet">parquet</option>
44 <option value="rds+csv">rds+csv</option>
45 <option value="both" selected="true">both</option>
46 </param>
42 </inputs> 47 </inputs>
43 <outputs> 48 <outputs>
44 <data format="zip" name="SimulationResults" 49 <data format="zip" name="SimulationResults"
45 label="SticsOnResults"> 50 label="SticsOnResults">
46 </data> 51 </data>