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annotate redelacxlsx2csv.xml @ 2:3dfb066dcdab draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d/tools/REDELACxlsx2csv commit e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d-dirty"
author siwaa
date Fri, 05 Dec 2025 16:12:55 +0000
parents b91beff0963c
children
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3dfb066dcdab "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d/tools/REDELACxlsx2csv commit e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d-dirty"
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1 <tool id="redelacXlsx2Csv" name="redelacXlsx2Csv" version="1.0.1">
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2 <description>to split a xlsx spatial unit configuration file into csv sheet 4 REDELAC</description>
dd02fab383bf "planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
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3 <requirements>
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3dfb066dcdab "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d/tools/REDELACxlsx2csv commit e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d-dirty"
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4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox:latest</container>
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5 </requirements>
dd02fab383bf "planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
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6 <command detect_errors="aggressive">
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7 <![CDATA[
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3dfb066dcdab "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d/tools/REDELACxlsx2csv commit e8749ba309ff18daeaea5c4a9e7ee4b7448bd58d-dirty"
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8 python $__tool_directory__/redelacxlsx2csv.py ${REDELACrot} ${USMs} ${Tec} ${Ini} ${Station} ${Liste_plantes} ${Successions}
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9 ]]>
dd02fab383bf "planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
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10 </command>
dd02fab383bf "planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
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11 <inputs>
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12 <param name="REDELACrot" type="data" format="xlsx" label="Select a REDELAC single spatial unit rotation input configuration (xlsx)"/>
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b91beff0963c "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/b275711eca6a471af5cb60ae996e0bd6c11461d6/tools/REDELACxlsx2csv commit b275711eca6a471af5cb60ae996e0bd6c11461d6-dirty"
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13 <param name="Tag" type="text" value="" label="Outputs tag"/>
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14 </inputs>
dd02fab383bf "planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
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15 <outputs>
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16 <data name="USMs" format="csv" label="USMsSheet${Tag}"/>
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17 <data name="Station" format="csv" label="StationsSheet${Tag}"/>
b91beff0963c "planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/b275711eca6a471af5cb60ae996e0bd6c11461d6/tools/REDELACxlsx2csv commit b275711eca6a471af5cb60ae996e0bd6c11461d6-dirty"
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18 <data name="Tec" format="csv" label="TecSheet${Tag}"/>
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19 <data name="Ini" format="csv" label="IniSheet${Tag}"/>
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20 <data name="Liste_plantes" format="csv" label="Liste_plantesSheet${Tag}"/>
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21 <data name="Successions" format="csv" label="Successions${Tag}"/>
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22 </outputs>
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23 <tests>
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24 </tests>
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25 <help>
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26 Documentation
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27 -------------
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28 A tool to split a REDELAC xlsx INPUT file
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29
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30 Credits
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31 -------
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32 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
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33 - Copyright: INRAE
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34 </help>
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35 </tool>