annotate stics4carsolel.xml @ 2:5e581bfc5341 draft

"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit c44e3ffa39b80279cb3226522f2b4f95f737e061"
author siwaa
date Fri, 28 Jan 2022 13:09:49 +0000
parents f1070dc2446c
children 6a77442a3598
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
1 <tool id="Stics4CarSolEl" name="Stics4CarSolEl" version="1.0.0">
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
2 <description>Vle Stics simulations in rotation parallelized by cvle for the CarSolEl project</description>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
3 <requirements>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/carsolel</container>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
5 </requirements>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
6 <command detect_errors="exit_code">
2
5e581bfc5341 "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit c44e3ffa39b80279cb3226522f2b4f95f737e061"
siwaa
parents: 0
diff changeset
7 bash $__tool_directory__/stics4carsolel.bash \${GALAXY_SLOTS:-2} ${cvle_plan} ${output_file} ${meteo_archive};
0
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
8 </command>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
9 <inputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
10 <param name="cvle_plan" type="data" format="csv" label="Select a cvle plan in (csv file)"/>
2
5e581bfc5341 "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit c44e3ffa39b80279cb3226522f2b4f95f737e061"
siwaa
parents: 0
diff changeset
11 <param name="meteo_archive" type="data" format="zip" label="Select a meteo archive (zip file)"/>
0
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
12 </inputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
13 <outputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
14 <data format='csv' name="output_file" label="Stics simulations results"/>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
15 </outputs>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
16 <tests>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
17 <test>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
18 <param name="cvle_plan" value="inputs/dummy50.csv" ftype="csv" />
2
5e581bfc5341 "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit c44e3ffa39b80279cb3226522f2b4f95f737e061"
siwaa
parents: 0
diff changeset
19 <param name="meteo_archive" value="inputs/meteo.zip" ftype="zip" />
0
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
20 <output name="output_file" ftype="csv">
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
21 <assert_contents>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
22 <has_n_lines n="151" />
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
23 </assert_contents>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
24 </output>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
25 </test>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
26 </tests>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
27 <help>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
28 the Stics4CarSolEl simulator
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
29 ============================
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
30
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
31 credits
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
32 -------
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
33
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
34 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
35 - Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
36 - Tool Site: https://forgemia.inra.fr/record/carsolel
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
37 - Copyright: INRAE
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
38 </help>
f1070dc2446c "planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit 79ec610c8fada89b587b48d008738ec75770d40a"
siwaa
parents:
diff changeset
39 </tool>