view stics4carsolel.bash @ 2:5e581bfc5341 draft

"planemo upload for repository https://forgemia.inra.fr/record/carsolel/-/tree/master/tools commit c44e3ffa39b80279cb3226522f2b4f95f737e061"
author siwaa
date Fri, 28 Jan 2022 13:09:49 +0000
parents bf2d7f74d5ba
children 6a77442a3598
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echo "Stics4CarSolEl Job starting:"
date;

n_slots=${1};
csv_plan=${2};
meteo_archive=${4};
sim_number=$(($(cat ${csv_plan} | wc -l) - 1));

b_size=1

echo "number of GALAXY_SLOTS: ${1}"

echo "expected simulations: ${sim_number}"
echo "cvle block size : ${b_size}"

if [ "$OMPI_COMM_WORLD_RANK" == "0" ]; then

    cp -r /data/vle-2001/pkgs/CarSolEl_data/data .
    rm -rf data/meteo
    cd data
    unzip ${meteo_archive}
    cd ..
fi

cvle -b $b_size -i ${2} -w work -P Stics4AgFlow -P CarSolEl_sim CarSolEl.vpz

if [ "$OMPI_COMM_WORLD_RANK" == "0" ]; then

    ls work_*/*_byUsm.txt | \
	xargs -t -i tail -n +2 {} | \
	sort -n -k 1 -t ';' > resWithoutHeader.csv

    head -1 work_0/1_byUsm.txt > header.cvs

    cat header.cvs resWithoutHeader.csv > res.csv

    mv res.csv ${3}

fi

echo "Stics4AgGlob Job ending:"
date;