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comparison tool_defaults_SUNFLO.xml @ 1:935e06766216 draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty"
author siwaa
date Thu, 25 Aug 2022 10:49:25 +0000
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0:53d753cb6b81 1:935e06766216
1 <tool id="SUNFLOdefaults" name="SUNFLO crop model default inputs and outputs" version="1.0.0">
2 <description></description>
3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21</container>
5 </requirements>
6 <command detect_errors="aggressive">
7 /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R sunflo_web.vpz sunflo";
8 cp file_default_input.csv ${inputs};
9 cp file_default_output.csv ${outputs};
10 </command>
11 <inputs>
12 </inputs>
13 <outputs>
14 <data format="csv" name="inputs" label="Sunflo default inputs"/>
15 <data format="csv" name="outputs" label="Sunflo default outputs"/>
16 </outputs>
17 <tests>
18 <test>
19 <output name="inputs">
20 <assert_contents>
21 <has_text text="simulation_engine.duration;simulation_engine.begin" />
22 <has_text text="AUZ_2006.txt;Jour;sunflo" />
23 </assert_contents>
24 </output>
25 <output name="outputs">
26 <assert_contents>
27 <has_text text="id;path;integration" />
28 <has_text text="INN;viewDbg/sunflo,sunflo_bio,contraintes:contrainte_azote.INN;all" />
29 </assert_contents>
30 </output>
31 </test>
32 </tests>
33
34 <help><![CDATA[
35 Sunflo crop model default inputs and outputs provider
36
37 Full documentation is available here : https://siwaa.toulouse.inrae.fr/ in section "Tool Tuto > Sunflo tool"
38 ]]>
39 </help>
40 </tool>
41