diff tool_defaults_SUNFLO.xml @ 1:935e06766216 draft

"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty"
author siwaa
date Thu, 25 Aug 2022 10:49:25 +0000
parents
children a08cdfcedd4c
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_defaults_SUNFLO.xml	Thu Aug 25 10:49:25 2022 +0000
@@ -0,0 +1,41 @@
+<tool id="SUNFLOdefaults" name="SUNFLO crop model default inputs and outputs" version="1.0.0">
+  <description></description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21</container>
+  </requirements>
+  <command detect_errors="aggressive">
+    /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R sunflo_web.vpz sunflo";
+    cp file_default_input.csv ${inputs};
+    cp file_default_output.csv ${outputs};
+  </command>
+  <inputs>
+  </inputs>
+  <outputs>
+    <data format="csv" name="inputs" label="Sunflo default inputs"/>
+    <data format="csv" name="outputs" label="Sunflo default outputs"/>
+  </outputs>
+    <tests>
+    <test>
+      <output name="inputs">
+	<assert_contents>
+	  <has_text text="simulation_engine.duration;simulation_engine.begin" />
+	  <has_text text="AUZ_2006.txt;Jour;sunflo" />
+	</assert_contents>
+      </output>
+      <output name="outputs">
+	<assert_contents>
+	  <has_text text="id;path;integration" />
+	  <has_text text="INN;viewDbg/sunflo,sunflo_bio,contraintes:contrainte_azote.INN;all" />
+	</assert_contents>
+      </output>
+    </test>
+  </tests>
+
+  <help><![CDATA[
+Sunflo crop model default inputs and outputs provider
+
+Full documentation is available here : https://siwaa.toulouse.inrae.fr/ in section "Tool Tuto > Sunflo tool"
+]]>
+  </help>
+</tool>
+