Mercurial > repos > siwaa > sunflo

annotate tool_defaults_SUNFLO.xml @ 1:935e06766216 draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty"
author siwaa
date Thu, 25 Aug 2022 10:49:25 +0000
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children a08cdfcedd4c
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1 <tool id="SUNFLOdefaults" name="SUNFLO crop model default inputs and outputs" version="1.0.0">
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2 <description></description>
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3 <requirements>
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4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21</container>
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5 </requirements>
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6 <command detect_errors="aggressive">
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7 /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R sunflo_web.vpz sunflo";
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8 cp file_default_input.csv ${inputs};
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9 cp file_default_output.csv ${outputs};
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10 </command>
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11 <inputs>
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12 </inputs>
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13 <outputs>
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14 <data format="csv" name="inputs" label="Sunflo default inputs"/>
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15 <data format="csv" name="outputs" label="Sunflo default outputs"/>
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16 </outputs>
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17 <tests>
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18 <test>
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19 <output name="inputs">
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20 <assert_contents>
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21 <has_text text="simulation_engine.duration;simulation_engine.begin" />
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22 <has_text text="AUZ_2006.txt;Jour;sunflo" />
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23 </assert_contents>
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24 </output>
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25 <output name="outputs">
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26 <assert_contents>
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27 <has_text text="id;path;integration" />
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28 <has_text text="INN;viewDbg/sunflo,sunflo_bio,contraintes:contrainte_azote.INN;all" />
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29 </assert_contents>
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30 </output>
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31 </test>
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32 </tests>
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34 <help><![CDATA[
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35 Sunflo crop model default inputs and outputs provider
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37 Full documentation is available here : https://siwaa.toulouse.inrae.fr/ in section "Tool Tuto > Sunflo tool"
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38 ]]>
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39 </help>
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40 </tool>
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