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comparison wine_quality.xml @ 2:c1b75945752a draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author siwaa
date Mon, 09 Dec 2024 10:31:09 +0000
parents c3841488b88d
children f542f29a920c
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1:c3841488b88d 2:c1b75945752a
3 <description>wine_quality</description> 3 <description>wine_quality</description>
4 4
5 <requirements> 5 <requirements>
6 6
7 <!-- singularity --> 7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:6d159f79349e231deadb738f79bd293c1a8dadd3</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container>
9 9
10 <!-- image locale 10 <!-- image locale
11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> 11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
12 12
13 </requirements> 13 </requirements>
14 14
15 <environment_variables>
16 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
17 </environment_variables>
18 <command detect_errors="aggressive"> 15 <command detect_errors="aggressive">
19 <![CDATA[ 16 <![CDATA[
20 . /fidle-tp/fidle-env/bin/activate; 17 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
21 mkdir /fidle-tp/fidle-env/cache_dir; export TRANSFORMERS_CACHE=/fidle-tp/fidle-env/cache_dir; 18 mkdir datasets-fidle &&
22 mkdir /fidle-tp/fidle-env/mpl_dir; export MPLCONFIGDIR=/fidle-tp/fidle-env/mpl_dir; 19 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
23 /bin/bash -c "python3 $__tool_directory__/wine_quality.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data '${datajson_text}'"; 20 python3 $__tool_directory__/wine_quality.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data '${datajson_text}' &&
24 cp OUTPUTS/quality.txt ${quality_txt}; 21 cp OUTPUTS/quality.txt ${quality_txt}"
25 ]]> 22 ]]>
26 </command> 23 </command>
27 24
28 <inputs> 25 <inputs>
29 <param name="datajson_text" optional="false" type="text" area="true" 26 <param name="datajson_text" optional="false" type="text" area="true"