Mercurial > repos > siwaa > wine_quality_predict

comparison wine_quality_predict.xml @ 4:e88a46bee6e5 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_predict commit c595a7b4b556ab642ecf0396957f2959139dc4ab-dirty
author siwaa
date Mon, 09 Dec 2024 10:53:55 +0000
parents 01bf4f689614
children 5024511f841e
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3:01bf4f689614 4:e88a46bee6e5
3 <description>wine_quality_predict</description> 3 <description>wine_quality_predict</description>
4 4
5 <requirements> 5 <requirements>
6 6
7 <!-- singularity --> 7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:c595a7b4b556ab642ecf0396957f2959139dc4ab</container>
9 9
10 <!-- image locale 10 <!-- image locale
11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container --> 11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
12 12
13 </requirements> 13 </requirements>
14 14
15 <environment_variables>
16 </environment_variables>
17 <command detect_errors="aggressive"> 15 <command detect_errors="aggressive">
18 <![CDATA[ 16 <![CDATA[
19
20 bash -e -c "source /fidle-tp/fidle-env/bin/activate && 17 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
21 mkdir datasets-fidle && 18 mkdir datasets-fidle &&
22 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) && 19 export FIDLE_DATASETS_DIR=\$(realpath -s datasets-fidle) &&
23 mkdir ipython_dir &&
24 export IPYTHONDIR=\$(realpath -s ipython_dir) &&
25 ipython profile create default &&
26 mkdir cache_dir &&
27 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
28 mkdir mpl_dir &&
29 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
30 python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} && 20 python3 /fidlemore/model_wine_lightning/wine_quality_predict.py -model_ckpt_filepath ${model_ckpt} -norm_config_json_filepath ${norm_config_json} -data_json_filepath ${data_json} &&
31 cp OUTPUTS/report.json ${report_json}" 21 cp OUTPUTS/report.json ${report_json}"
32 ]]> 22 ]]>
33 </command> 23 </command>
34 24