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annotate ESSAISENCOURS.txt @ 18:1437cd0df25b draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 12:52:22 +0000
parents 5a94c8c7c8cc
children 855883e4a317
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1 #------------------------------------------------------------------------------
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2 # ESSAIS Vendredi 7 juin
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3 #------------------------------------------------------------------------------
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4 <tool id="gama_tool" name="gama" version="1.0.0b">
e3153cc69e41 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
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6 8000 -> 6868
e3153cc69e41 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
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8 => RES : tourne infini
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10 #------------------------------------------------------------------------------
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11 <tool id="gama_tool" name="gama" version="1.0.0j">
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13 (ajout de traces dans TTT.txt)
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15 - /bin/bash cmd_gama_headless.sh > run_server.txt & sleep 20 && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
8623205348e5 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
siwaa
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16 + /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 300 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
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siwaa
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18 #------------------------------------------------------------------------------
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19 # ESSAIS Lundi 10 juin
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20 #------------------------------------------------------------------------------
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22 gama.def:
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23 + chmod -R 777 /opt
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25 <tool id="gama_tool" name="gama" version="1.0.0q">
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27 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
e7772bdae78d planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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29 /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
5a94c8c7c8cc planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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31 chmod -R 777 gama-platform;
5a94c8c7c8cc planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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33 vim MY_gama-headless.sh :
5a94c8c7c8cc planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
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34 MY_JAVA_DIR=./_java
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35 ...
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36 if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
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38 MY_sequential_example.py:
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39 #MY_SERVER_URL = "localhost"
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40 MY_SERVER_URL = "0:0:0:0:0:0:0:1" # 0:0:0:0:0:0:0:1 entered the room!
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42 #------------------------------------------------------------------------------
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44 Singularity> echo $JAVA_HOME
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45 /opt/openjdk-17
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46 Singularity> which java
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47 /opt/openjdk-17/bin/java
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48 Singularity> java -version
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49 openjdk version "17-ea" 2021-09-14
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50 OpenJDK Runtime Environment (build 17-ea+14)
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51 OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing)
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