Mercurial > repos > siwaa > insilicow

annotate test-data/input/WILD/farmer-plan_WILD.txt @ 3:3fe3e1e6a40b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
author siwaa
date Mon, 25 Aug 2025 16:37:43 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
1 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
2 # #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
3 # InSiliCow #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
4 # Virtual farm specification #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
5 # #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
6 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
7
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
8 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
9 #====== GENERAL SETTINGS #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
10 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
11
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
12 #______ Include files
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
13 @include farmer-log.txt # providing log action and trigger
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
14 @include farmer-base.txt # providing basic components
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
15
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
16 #______ Models: specify models for individual cows
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
17 param_general{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
18 garuns_type = garuns_olivier
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
19 rpm_type = rpm_lite
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
20 abortion_type = abortion_olivier
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
21 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
22
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
23 #______ Simulation: provide time range, output database and code name
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
24 init{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
25 begin_date = $start_date$ 00:00:00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
26 end_date = $stop_date$ 23:59:59
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
27 output_db = db_events.sqlite
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
28 output_config = config.txt
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
29 name = $sim_id$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
30 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
31
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
32 #______ Log Farm information
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
33 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
34 trigger = init
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
35 action = log_db farm_tag $farm_tag$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
36 action = log_db start_date $start_date$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
37 action = log_db stop_date $stop_date$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
38 action = log_db now_date $now_date$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
39 action = log_db latitude $latitude$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
40 action = log_db longitude $longitude$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
41 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
42
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
43 #______ End of simulation
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
44 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
45 type = chron
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
46 name = tr_end_simu
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
47 scheme = $stop_date$ 23:59:58
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
48 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
49
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
50 #______ Past and future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
51 condition{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
52 type = chron_range
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
53 name = past
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
54 from = $start_date$ 00:00:00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
55 to = $now_date$ 00:00:01
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
56 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
57
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
58 condition{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
59 type = chron_range
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
60 name = future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
61 from = $now_date$ 00:00:00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
62 to = $stop_date$ 23:59:59
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
63 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
64
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
65 #______ Day one
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
66 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
67 type = chron
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
68 name = day_one_herd
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
69 scheme = $start_date$ 23:59:59
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
70 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
71 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
72 type = custom
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
73 name = day_one
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
74 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
75 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
76 trigger = day_one_herd
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
77 action = broadcast_now day_one
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
78 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
79
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
80 #______ Calving tag
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
81 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
82 trigger = calving
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
83 condition = calf_sex male
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
84 condition = future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
85 action = log_db birth_of_male no_tag
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
86 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
87 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
88 trigger = calving
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
89 condition = calf_sex female
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
90 condition = future
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
91 action = log_db birth_of_female no_tag
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
92 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
93
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
94 #______ Manage initial dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
95 state{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
96 state = INITIAL-DAM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
97 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
98
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
99 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
100 trigger = day_one
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
101 action = state_add INITIAL-DAM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
102 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
103 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
104 trigger = parturition
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
105 condition = is_in INITIAL-DAM
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
106 condition = not is_in IN_WILD
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
107 action = trigger_later tr_delete_cow 1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
108 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
109 trigger{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
110 type = custom
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
111 name = tr_delete_cow
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
112 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
113 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
114 trigger = tr_delete_cow
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
115 action = delete_cow remove_initial_dam
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
116 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
117
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
118 #______ Stoechio
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
119 stoechio{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
120
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
121 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
122
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
123 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
124 #====== FARM COMPONENTS: genotype #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
125 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
126
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
127 #______ Genetic_sD: provide Mendelian sampling std dev for transmission of Genetic Scaling Parameters (GSP)
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
128 # GSP_newborn ~ Normal [ (GSP_mother + GSP_father)/2 , GSP_sd ] | within (min, max)
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
129
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
130 genetic_sd{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
131 garuns_olivier.WM{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
132 sd = 50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
133 min = 200
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
134 max = 800
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
135 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
136
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
137 garuns_olivier.khi_M {
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
138 sd = 0.06
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
139 min = 0.1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
140 max = 0.6
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
141 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
142
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
143 garuns_olivier.b0{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
144 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
145 min = 0.80
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
146 max = 2.40
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
147 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
148
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
149 garuns_olivier.nu_X{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
150 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
151 min = 0.2
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
152 max = 1.8
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
153 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
154
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
155 garuns_olivier.nu_Y{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
156 sd = 0.1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
157 min = 0.2
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
158 max = 1.8
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
159 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
160
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
161 garuns_olivier.nu_F{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
162 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
163 min = 0.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
164 max = 1.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
165 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
166
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
167 garuns_olivier.nu_P{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
168 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
169 min = 0.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
170 max = 1.50
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
171 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
172
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
173 garuns_olivier.eD_star{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
174 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
175 min = 9.0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
176 max = 15.0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
177 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
178
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
179 garuns_olivier.NDF_star{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
180 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
181 min = 0.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
182 max = 0.90
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
183 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
184
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
185 garuns_olivier.psi{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
186 sd = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
187 min = 0
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
188 max = 1
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
189 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
190
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
191 rpm_lite.nu_I{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
192 sd = 0.007
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
193 min = 0.00
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
194 max = 0.20
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
195 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
196
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
197 rpm_lite.nu_B{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
198 sd = 0.07
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
199 min = 1.20
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
200 max = 2.20
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
201 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
202
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
203 rpm_lite.nu_Z{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
204 sd = 0.02
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
205 min = 0.90
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
206 max = 1.10
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
207 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
208 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
209
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
210 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
211 #====== FARM COMPONENTS: herd (genotype-based initialization of individual cows) #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
212 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
213
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
214 #______ INITIALIZATION of WILD herd
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
215
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
216 link{
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
217 trigger = init
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
218 action = buy_calf genotype_cow_wild $nb_cow$
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
219 }
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
220
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
221
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
222 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
223 #====== FARM COMPONENTS: semen (genotype-based initialization of semen from individual bulls) #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
224 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
225
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
226
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
227 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
228 #====== FARM COMPONENTS: heat detection #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
229 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
230
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
231
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
232 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
233 #====== FARM COMPONENTS: feedstuffs #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
234 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
235
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
236
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
237 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
238 #====== FARM COMPONENTS: diets #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
239 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
240
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
241
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
242 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
243 #====== FARM COMPONENTS: time schemes #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
244 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
245
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
246
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
247 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
248 #====== FARM COMPONENTS: groups #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
249 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
250
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
251
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
252 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
253 #====== FARM COMPONENTS: operations #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
254 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
255
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
256
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
257 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
258 #====== FARM COMPONENTS: transfers #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
259 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
260
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
261
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
262 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
263 #====== FARM COMPONENTS: perturbations #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
264 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
265
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
266
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
267 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
268 #====== FARM COMPONENTS: parcels #
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
269 #################################################################################################################
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
270
3fe3e1e6a40b "planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
siwaa
parents:
diff changeset
271