diff redelacPlanExpander.xml @ 0:bc7ae8dd3d3c draft

"planemo upload for repository https://forgemia.inra.fr/redelac commit 841d6c6ada2dad3dd575d25aab620491fda5c611"
author siwaa
date Mon, 19 Jun 2023 15:51:01 +0000
parents
children 789a70a4c317
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/redelacPlanExpander.xml	Mon Jun 19 15:51:01 2023 +0000
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+<tool id="redelacPlanExpander" name="redelacPlanExpander" version="1.0.0">
+  <description>to expand REDELAC situations according to a plan</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox:latest</container>
+  </requirements>
+  <command detect_errors="aggressive">
+    <![CDATA[
+	     python $__tool_directory__/redelacPlanExpander.py ${typeOfRotation} ${USMs} ${Liste_plantes} ${REDELACplan} ${mailles} ${USMsExp} ${SuccessionsExp} ${Stations} ${aclimParHorizon} ${latitudeMailleDrias} ${StationsExp}
+     ]]>
+  </command>
+  <inputs>
+    <param name="typeOfRotation" type="select" label="Select the type of rotation">
+        <option value="PP">Prairie Permanente</option>
+        <option value="GC">Grande Culture</option>
+    </param>
+    <param name="REDELACplan" type="data" format="csv" label="Select a redelac spatial plan (csv)"/>
+    <param name="USMs" type="data" format="csv" label="Select a USMs list template (csv)"/>
+    <param name="Liste_plantes" type="data" format="csv" label="Select a Liste_plantes (csv)"/>
+    <param name="Stations" type="data" format="csv" label="Select a Stations (csv)"/>
+    <param name="mailles" type="data" format="csv" label="Select mailles files with link between DRIAS and Safran (csv)"/>
+    <param name="aclimParHorizon" type="data" format="csv" label="Select a aclimParHorizon (csv)"/>
+    <param name="latitudeMailleDrias" type="data" format="csv" label="Select a latitudeMailleDrias(csv)"/>
+  </inputs>
+  <outputs>
+    <data format="csv" name="USMsExp" label="Expanded list of USMs (csv)"/>
+    <data format="csv" name="StationsExp" label="Expanded list of meteo Stations (csv)"/>
+    <data format="csv" name="SuccessionsExp" label="Expanded list of successions (csv)"/>
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+Documentation
+-------------
+A tool to expand Stics situations according to a REDELAC spatial plan.
+
+Credits
+-------
+-  Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Copyright: INRAE
+  </help>
+</tool>