Mercurial > repos > siwaa > wine_quality_train_eval

annotate wine_quality_train_eval.xml @ 15:c1d9515c9434 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
author siwaa
date Fri, 06 Dec 2024 17:57:20 +0000
parents dcc0590d9653
children dd7d99707a65
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202391eebeb6 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc
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1 <tool id="wine_quality_train_eval" name="wine_quality_train_eval"
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2 version="1.0.0">
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4 <description>wine_quality_train_eval</description>
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6 <requirements>
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8 <!-- singularity A REMETTRE (avant essais)
c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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9 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:1906137478520a9f71a4d8996c0a8827f27aed16</container -->
c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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14 <!-- singularity ESSAIS -->
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15 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/dnn_fidlemore:ea8ac4fa4f127a69480c70e8966353df331d26ed</container>
c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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c1d9515c9434 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit ea8ac4fa4f127a69480c70e8966353df331d26ed-dirty
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20 <!-- image locale
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21 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_dnn/use/DNN/containers/fidlemore.simg</container -->
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23 </requirements>
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25 <environment_variables>
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26 <environment_variable name="FIDLE_DATASETS_DIR">/fidle-tp/datasets-fidle</environment_variable>
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27 </environment_variables>
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28 <command detect_errors="aggressive">
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29 <![CDATA[
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51f36952ccaa planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty
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30 bash -e -c "source /fidle-tp/fidle-env/bin/activate &&
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31 export FIDLE_DATASETS_DIR=/fidle-tp/datasets-fidle &&
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dcc0590d9653 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit 1906137478520a9f71a4d8996c0a8827f27aed16-dirty
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32 export IPYTHONDIR=\$(realpath -s ipython_dir) &&
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d490c7a4c63b planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty
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33 mkdir cache_dir &&
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34 export TRANSFORMERS_CACHE=\$(realpath -s cache_dir) &&
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35 mkdir mpl_dir &&
ce2d614cac69 planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/dnn/DNN/galaxy-tools/wine_quality_train_eval commit e7c4e447552083db7eaecbdf139a7c359fe9becc-dirty
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36 export MPLCONFIGDIR=\$(realpath -s mpl_dir) &&
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37 python3 $__tool_directory__/toto_wine_quality_train_eval.py -dataset_filepath ${dataset_csv} &&
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38 cp OUTPUTS/model.ckpt ${model_ckpt} &&
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39 cp OUTPUTS/norm_config.json ${norm_config_json} &&
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40 cp OUTPUTS/report.json ${report_json}"
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41 ]]>
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42 </command>
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44 <inputs>
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45 <param name="dataset_csv" optional="true" type="data" format="csv"
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46 label="File of dataset used to train and test the model (.csv)"/>
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47 </inputs>
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49 <outputs>
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50 <data format="ckpt" name="model_ckpt"
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51 label="model_ckpt model file (.ckpt)"/>
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52 <data format="json" name="norm_config_json"
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53 label="norm_config normalization configuration (.json)"/>
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54 <data format="json" name="report_json" label="report (.json)"/>
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55 </outputs>
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57 <tests>
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58 </tests>
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60 <help><![CDATA[
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62 wine_quality_train_eval.xml
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64 ===========================
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66 Code:
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68 ----
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70 - wine_quality_train_eval.py
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72 Inputs:
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74 -------
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76 - dataset file (.csv) :
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78 File containing dataset used to train and test the model.
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80 The dataset will be splitted in 2 parts (training part, validation part).
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82 If not given, an embedded default file used.
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84 Outputs:
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85
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86 --------
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88 - Model file (.ckpt)
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90 - Normalization configuration file (.json)
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92 - Report file (.json)
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94 Credits:
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96 --------
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98 - Author: Nathalie Rousse nathalie.rousse@inrae.fr
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99 - Copyright: INRAE
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101 ]]>
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102 </help>
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104 </tool>