Mercurial > repos > siwaa > redelac_stics_t

annotate redelacSticsTool.xml @ 24:0e673be917e3 draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 596ce5faab821d6dcaf17fd56e002adc5be472fc"
author siwaa
date Tue, 01 Sep 2026 07:35:51 +0000
parents 3b44cb0a1e76
children 6839c9c8555e
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1 <tool id="redelacSticsTool" name="redelacSticsTool" version="1.0.26">
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2 <description>to run Stics for REDELAC</description>
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3 <requirements>
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4 <container type="singularity">docker://registry.forge.inrae.fr/redelac/redelac-toolbox/sticsrpacks:5337507635242b3ad0f3559a1a6b666512ecf002
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5 </container>
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6 </requirements>
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7 <command detect_errors="aggressive">
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8 <![CDATA[
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9 env &&
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10 curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" &&
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11 unzip awscliv2.zip &&
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12 ./aws/install --update -i ~/.local/aws-cli -b ~/.local/bin &&
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13 export PATH=\${HOME}/.local/bin:\${PATH} &&
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14 aws --version &&
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15 #if $additional:
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16 additional=${additional} &&
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17 #else
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18 additional=noAdditionalPlantOrConfig &&
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19 #end if
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20 #if $REDELAC.optim == 'optim':
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21 parallel=${$REDELAC.parallel} &&
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22 #else
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23 parallel=sequential &&
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24 #end if
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25 bash $__tool_directory__/redelacSticsTool.bash ${REDELAC.optim} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ${compress} ${outputsOnly} ${Scenario} ${SimulationResults} ${SuccessionPlan} ${outpuType} ${S3.S3} s3://${Bucket}/${objectPath}
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26 ]]>
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27 </command>
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28 <inputs>
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29 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/>
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30 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/>
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31 <param name="Climat" type="data" format="zip" label="Select a climat scenario (zip file)"/>
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32 <param name="USMs" type="data" format="csv" label="Select the USMs sheet (csv)"/>
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33 <param name="Tec" type="data" format="csv" label="Select the Tec sheet (csv)"/>
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34 <param name="Ini" type="data" format="csv" label="Select the Ini sheet (csv)"/>
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35 <param name="Station" type="data" format="csv" label="Select the Station sheet (csv)"/>
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36 <param name="additional" type="data" optional="true" format="zip" label="[optional] Select a zipped archive with folder plant (and or) config (zip file)"/>
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37 <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/>
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38 <conditional name="REDELAC">
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39 <param name="optim" type="boolean" checked="true" truevalue="optim" falsevalue="noptim" label="To speed up the xml2txt conversion process by generating file only once"/>
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40 <when value="optim">
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41 <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential" label="To parallelize the xml2txt conversion process" />
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42 </when>
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43 <when value="noptim">
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44 </when>
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45 </conditional>
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46 <param name="outputsOnly" type="boolean" checked="true" truevalue="yes" falsevalue="no" label="To get results only"/>
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47 <param name="compress" type="boolean" checked="true" truevalue="-6" falsevalue="-0" label="To compress or not the output(compressing does slow down the job)"/>
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48 <param name="outpuType" type="select" label="To choose the outpuType of results (rds+csv, parquet, both)">
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49 <option value="parquet">parquet</option>
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50 <option value="rds+csv">rds+csv</option>
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51 <option value="both" selected="true">both</option>
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52 </param>
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53 <conditional name="S3">
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54 <param name="S3" type="boolean" checked="true" truevalue="ok" falsevalue="ko" label="To store directly on a Tenant"/>
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55 <when value="ok">
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56 <param name="objectPath" type="text" value="Simulations-stics/sous-territoires/PDF/ICHEC-EC-EARTH" label="a path to the object"/>
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57 <param name="Bucket" type="text" value="dairyfit-donnees-produites" label="the bucket where to store"/>
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58 </when>
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59 <when value="ko">
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60 </when>
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61 </conditional>
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62 </inputs>
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63 <outputs>
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64 <data format="zip" name="SimulationResults"
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65 label="SticsOnResults">
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66 <filter>S3.S3 == False</filter>
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67 </data>
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68 <data format="zip" name="GeneratedWorkspace"
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69 label="GeneratedWorkspace$">
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70 <filter>outputsOnly == False</filter>
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71 </data>
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72 </outputs>
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73 <tests>
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74 <test>
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75 <param name="compress" value="false" ftype="boolean" />
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76 <param name="outputsOnly" value="false" ftype="boolean" />
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77 <param name="optim" value="true" ftype="boolean" />
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78 <param name="parallel" value="true" ftype="boolean" />
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79 <param name="Workspace" value="input/rot1_3.zip" ftype="zip" />
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80 <param name="Climat" value="input/flat_cnrm-cm5-aladin63_rcp2.6.zip" ftype="zip" />
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81 <param name="USMs" value="input/USMsSheetExp.csv" ftype="csv" />
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82 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
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83 <param name="Ini" value="input/IniSheet.csv" ftype="csv" />
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84 <param name="Station" value="input/StationsSheetExp.csv" ftype="csv" />
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85 <param name="additional" value="input/conf_rot1_3.zip" ftype="zip" />
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86 <param name="SuccessionPlan" value="input/successionsSheetExp.csv" ftype="csv" />
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87 <output name="GeneratedWorkspace" ftype="zip" >
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88 <assert_contents>
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89 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1973-PP1\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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90 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1973-PP1" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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91 </has_archive_member>
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92 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1974-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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93 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1974-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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94 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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95 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1975-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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96 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1975-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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97 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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98 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1976-PPorg\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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99 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1976-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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100 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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101 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1977-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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102 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1977-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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103 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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104 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2000-PPorg\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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105 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2000-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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106 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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107 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2001-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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108 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2001-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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109 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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110 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2002-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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111 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2002-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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112 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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113 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2003-PPorg\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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114 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2003-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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115 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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116 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2004-PP\/new_travail.usm">
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117 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2004-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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118 </has_archive_member>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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119 </assert_contents>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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120 </output>
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121 <output name="SimulationResults" ftype="zip" >
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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122 <assert_contents>
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123 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-637_NPP1-scenarioName.rds">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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124 <has_size value="0" negate="true" />
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125 </has_archive_member>
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126 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-638_NPP1-scenarioName.rds">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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127 <has_size value="0" negate="true" />
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128 </has_archive_member>
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129 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-637_NPP1-scenarioName.csv">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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130 <has_n_lines n="133" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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131 </has_archive_member>
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132 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-638_NPP1-scenarioName.csv">
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133 <has_n_lines n="133" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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134 </has_archive_member>
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135 </assert_contents>
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136 </output>
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137 </test>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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138 <test>
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139 <param name="compress" value="false" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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140 <param name="outputsOnly" value="false" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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141 <param name="optim" value="true" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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142 <param name="parallel" value="false" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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143 <param name="Workspace" value="input/rot1_3.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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144 <param name="Climat" value="input/flat_cnrm-cm5-aladin63_rcp2.6.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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145 <param name="USMs" value="input/USMsSheetExp.csv" ftype="csv" />
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146 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
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147 <param name="Ini" value="input/IniSheet.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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148 <param name="Station" value="input/StationsSheetExp.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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149 <param name="additional" value="input/conf_rot1_3.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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150 <param name="SuccessionPlan" value="input/successionsSheetExp.csv" ftype="csv" />
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151 <output name="GeneratedWorkspace" ftype="zip" >
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152 <assert_contents>
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153 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1973-PP1\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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154 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1973-PP1" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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155 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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156 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1974-PP\/new_travail.usm">
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157 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1974-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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158 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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159 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1975-PP\/new_travail.usm">
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160 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1975-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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161 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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162 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1976-PPorg\/new_travail.usm">
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163 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1976-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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164 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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165 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1977-PP\/new_travail.usm">
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166 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1977-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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167 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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168 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2000-PPorg\/new_travail.usm">
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169 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2000-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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170 </has_archive_member>
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171 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2001-PP\/new_travail.usm">
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172 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2001-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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173 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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174 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2002-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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175 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2002-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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176 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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177 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2003-PPorg\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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178 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2003-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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179 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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180 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2004-PP\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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181 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2004-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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182 </has_archive_member>
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183 </assert_contents>
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184 </output>
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185 <output name="SimulationResults" ftype="zip" >
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186 <assert_contents>
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187 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-637_NPP1-scenarioName.rds">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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188 <has_size value="0" negate="true" />
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189 </has_archive_member>
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190 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-638_NPP1-scenarioName.rds">
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191 <has_size value="0" negate="true" />
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192 </has_archive_member>
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193 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-637_NPP1-scenarioName.csv">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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194 <has_n_lines n="133" />
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195 </has_archive_member>
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196 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-638_NPP1-scenarioName.csv">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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197 <has_n_lines n="133" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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198 </has_archive_member>
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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199 </assert_contents>
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200 </output>
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201 </test>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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202 <test>
7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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203 <param name="compress" value="false" ftype="boolean" />
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204 <param name="outputsOnly" value="false" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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205 <param name="optim" value="false" ftype="boolean" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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206 <param name="Workspace" value="input/rot1_3.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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207 <param name="Climat" value="input/flat_cnrm-cm5-aladin63_rcp2.6.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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208 <param name="USMs" value="input/USMsSheetExp.csv" ftype="csv" />
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209 <param name="Tec" value="input/TecSheet.csv" ftype="csv" />
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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210 <param name="Ini" value="input/IniSheet.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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211 <param name="Station" value="input/StationsSheetExp.csv" ftype="csv" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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212 <param name="additional" value="input/conf_rot1_3.zip" ftype="zip" />
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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213 <param name="SuccessionPlan" value="input/successionsSheetExp.csv" ftype="csv" />
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214 <output name="GeneratedWorkspace" ftype="zip" >
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215 <assert_contents>
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216 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1973-PP1\/new_travail.usm">
23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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217 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1973-PP1" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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218 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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219 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1974-PP\/new_travail.usm">
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220 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1974-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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221 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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222 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-NA-1975-PP\/new_travail.usm">
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223 <has_text text="806_1893-637_NPP1-1-3-PP-NA-1975-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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224 </has_archive_member>
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225 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1976-PPorg\/new_travail.usm">
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226 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1976-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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227 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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228 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-1977-PP\/new_travail.usm">
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229 <has_text text="806_1893-637_NPP1-1-3-PP-ref-1977-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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230 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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231 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2000-PPorg\/new_travail.usm">
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232 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2000-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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233 </has_archive_member>
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234 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2001-PP\/new_travail.usm">
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235 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2001-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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236 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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237 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2002-PP\/new_travail.usm">
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238 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2002-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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239 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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240 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2003-PPorg\/new_travail.usm">
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241 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2003-PPorg" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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242 </has_archive_member>
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23fc2d7fef97 "planemo upload for repository https://forgemia.inra.fr/redelac commit dad4c83e555d8c94c7bd3442c9b4771af97a0462"
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243 <has_archive_member path="rot1_3\/txt_files\/806_1893-637_NPP1-1-3-PP-ref-2004-PP\/new_travail.usm">
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244 <has_text text="806_1893-637_NPP1-1-3-PP-ref-2004-PP" />
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7f8f474a7bd7 "planemo upload for repository https://forgemia.inra.fr/redelac commit 29a2aee3b41d8da4d056600ea5cf4af978c714b9"
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245 </has_archive_member>
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246 </assert_contents>
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247 </output>
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248 <output name="SimulationResults" ftype="zip" >
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249 <assert_contents>
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250 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-637_NPP1-scenarioName.rds">
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251 <has_size value="0" negate="true" />
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252 </has_archive_member>
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253 <has_archive_member path="analyse_simulations_STICS\/1\/3\/outputs-3-806_1893-638_NPP1-scenarioName.rds">
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254 <has_size value="0" negate="true" />
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255 </has_archive_member>
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256 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-637_NPP1-scenarioName.csv">
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257 <has_n_lines n="133" />
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258 </has_archive_member>
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259 <has_archive_member path="analyse_simulations_STICS\/1\/3\/report-3-806_1893-638_NPP1-scenarioName.csv">
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260 <has_n_lines n="133" />
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261 </has_archive_member>
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262 </assert_contents>
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263 </output>
0
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264 </test>
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265 </tests>
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266 <help>
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267 *The usage of this tool is restricted to the user of the redelac_authorized group.*
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268
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269 *To be granted, apply to the REDELAC Project Team and then request to SIWAA*
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270
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271 Documentation
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272 -------------
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273 A tool to generate Stics Inputs according to a plan for REDELAC
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274
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275 Credits
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276 -------
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277 - Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
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278 - Stics Site: https://www6.paca.inra.fr/stics_eng
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279 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
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280 - Copyright: INRAE
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281 </help>
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282 </tool>